![]() The link contains a table which attempts to do a feature comparison. I have opted to try to keep my notes fairly distro-agnostic as well. ![]() they are Linux native apps and have GUIs, from the descriptions they should all work as duplicate detectors as well). The listed apps do all meet the requirements mentioned in the OP to the best of my knowledge (e.g. they should work with Ubuntu as well as any other distro) but I have not tested them. Note that these should all be disto-agnostic (e.g. I found a list of some GUI duplicate finders while doing searches and thought I would add to this since this page had pretty decent SEO rankings in my searches.
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